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Analysis of RNA-seq from GEO Database

Created on 5/28/2018

Note: all steps done in Ubuntu 18.04 LTS system

1 Download, install and configure aspera

Download Aspera Connect.
see the PDF Guide on the bottom of the download page to install and configure the Aspera Connect.

2 FastQC Quality Control

FastQC is buillt in Ubuntu system, therefore install it by the commond:

sudo apt-get install fastqc

2.1 Fastqc commond

$ fastqc -o . -t 5 -f fastq SRR2094288.fastq &